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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Matthias Bürgi; Enrico Celio; Vasco Diogo; Anna M. Hersperger; +6 Authors

    Over the past 25 years, the study of driving forces of landscape change has developed into a central theme in land change science by contributing to theory development, promoting the analysis of causation of change and gaining insights into how landscape development could be steered into a societally more desirable direction. Based on this progress, we designate important research avenues, reviewing critical challenges forming the base for advancing the study of driving forces of landscape change and addressing the question on how the study of driving forces can contribute to system transformative research. For each of the research avenues, we describe the current dominant approach and provide some specific ways of advancing both the conceptualization and the research methods. Together, advancing on these research avenues will promote a more social-ecological systems perspective to the study of driving forces of landscape change. Journal of Land Use Science, 17 (1) ISSN:1747-4248 ISSN:1747-423X

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    Journal of Land Use Science
    Article . 2022 . Peer-reviewed
    License: CC BY NC ND
    Data sources: Crossref
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    https://doi.org/10.48350/17838...
    Article . 2022
    License: CC BY NC ND
    Data sources: Datacite
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    Research Collection
    Article . 2022
    License: CC BY NC ND
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Research Collectionarrow_drop_down
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      Journal of Land Use Science
      Article . 2022 . Peer-reviewed
      License: CC BY NC ND
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      https://doi.org/10.48350/17838...
      Article . 2022
      License: CC BY NC ND
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      Research Collection
      Article . 2022
      License: CC BY NC ND
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Marie-Laure Desprez-Loustau; Gilles Saint-Jean; Benoit Barrès; Cécile Françoise Dantec; +1 Authors

    Context[br/] Parasites can induce strong effects on their host’s growth, not only as a result of host resource exploitation (growth loss) but also with a potential adaptive value for host (tolerance response) and themselves (increased transmission).[br/] [br/] Aims[br/] We assessed these three types of phenotypic changes in oak seedlings infected by powdery mildew.[br/] [br/] Methods[br/] A manipulative field experiment with three levels of parasite inoculum was designed in order to tease apart infection from genetic effects on oak growth. Seedlings were monitored during 3 years for height growth, phenology and infection.[br/] [br/] Results[br/] Powdery mildew infection induced both significant growth loss and qualitative changes in plant architecture. The most striking and unexpected change was increased growth polycyclism in infected seedlings. This benefitted both the host as a form of compensation for infection-caused height loss, and the pathogen, by increasing sporulation.[br/] [br/] Conclusion[br/] The study highlights the effect of parasites in the expression of plant phenotypic traits, such as phenology and ultimately tree architecture. Both host tolerance and parasitic manipulation may be involved in the observed changes in growth patterns. These results suggest a complex interplay between development and defence in trees and emphasize the need to better assess tolerance mechanisms when considering the defence strategies of trees against pathogens.

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    Annals of Forest Science
    Article . 2014 . Peer-reviewed
    License: Springer TDM
    Data sources: Crossref
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    ProdInra
    Article . 2014
    Data sources: ProdInra
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Walker, Emily; Monestiez, Pascal; Gomez, Cécile; Lagacherie, Philippe;

    The limited availability of soil information has been recognized as a main limiting factor in digital soil mapping (DSM) studies. It is therefore important to optimize the joint use of the three sources of soil data that can be used as inputs of DSM models, namely spatial sets of measured sites, soil maps and soil sensing products.In this paper, we propose to combine these three inputs, through a cokriging with a categorical external drift (CKCED). This new interpolation technique was applied for mapping seven soil properties over a 24.6 km2 area located in the vineyard plain of Languedoc (Southern France), using an hyperspectral imagery product as example of a soil sensing data. Cross-validation results of CKCED were compared with those of five spatial and non-spatial techniques using one of these inputs or a combination of two of them.The results obtained in the La Peyne Catchment showed i) the utility of soil map and hyperspectral imagery products as auxiliary data for improving soil property predictions ii) the greater added-value of the latter against the former in most situations and iii) the feasibility and the interest of CKCED in a limited number of soil properties and data configurations. Testing CKCED in case study with soil maps of better quality and soil sensing techniques covering more area and depths should be necessary to better evaluate the benefits of this new technique. International audience

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    Geoderma
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    ProdInra
    Article . 2017
    License: CC BY SA
    Data sources: ProdInra
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    Horizon / Pleins textes
    Other literature type . 2017
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Geoderma
    Article . 2017 . Peer-reviewed
    License: Elsevier TDM
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Mémoires en Sciences...arrow_drop_down
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      Geoderma
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      ProdInra
      Article . 2017
      License: CC BY SA
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      Horizon / Pleins textes
      Other literature type . 2017
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Geoderma
      Article . 2017 . Peer-reviewed
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    Authors: Camille Abadie; Fabienne Maignan; Marine Remaud; Kukka-Maaria Kohonen; +8 Authors

    Gross primary production (GPP) by boreal forests is highly sensitive to environmental changes. However, GPP simulated by land surface models (LSMs) remains highly uncertain due to the lack of direct photosynthesis observations at large scales. Carbonyl sulfide (COS) has emerged as a promising proxy to improve the representation of GPP in LSMs. Because COS is absorbed by vegetation following the same diffusion pathway as CO2 during photosynthesis and not emitted back to the atmosphere, incorporating a mechanistic representation of vegetation COS uptake in LSMs allows using COS observations to refine GPP representation. Here, we perform ecosystem COS flux and GPP data assimilations to constrain the COS- and GPP-related parameters in the ORCHIDEE LSM for boreal evergreen needleleaf forests (BorENF). Assimilating ecosystem COS fluxes at Hyytiälä forest increases the simulated net ecosystem COS uptake by 14%. This increase largely results from changes in the internal conductance to COS, highlighting the need to improve the representation of COS internal diffusion and consumption. Moreover, joint assimilation of ecosystem COS flux and GPP at Hyytiälä improves the simulated latent heat flux, contrary to the GPP-only data assimilation, which fails to do so. Finally, we scaled this assimilation framework up to the boreal region and find that the joint assimilation of COS at Hyytiälä and GPP fluxes at 10 BorENF sites increases the modeled vegetation COS uptake up to 18%, but not GPP. Therefore, this study encourages the use of COS flux observations to inform GPP and latent heat flux representations in LSMs. Journal of Geophysical Research: Biogeosciences, 128 (7) ISSN:2169-8961 ISSN:0148-0227 ISSN:2169-8953

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    Research Collection
    Article . 2023
    License: CC BY
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    Research@WUR
    Article . 2023
    License: CC BY
    Data sources: Research@WUR
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    Journal of Geophysical Research Biogeosciences
    Article . 2023 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
    https://doi.org/10.5194/egusph...
    Other literature type . 2023
    Data sources: Crossref
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    Authors: Kellerhals, Markus;
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    Research Collection
    Doctoral thesis . 1985
    ETH Zürich Research Collection
    Doctoral thesis . 1985
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      Doctoral thesis . 1985
      ETH Zürich Research Collection
      Doctoral thesis . 1985
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    Authors: Rumbou, Artemis;
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    Doctoral thesis . 2004
    ETH Zürich Research Collection
    Doctoral thesis . 2004
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      Doctoral thesis . 2004
      ETH Zürich Research Collection
      Doctoral thesis . 2004
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    Authors: Barthod, Sandrine; Epron, Daniel;

    Variations du coût de construction associées au renouvellement de la surface foliaire chez de jeunes plants de deux espèces sympatriques de forêt tempérée (Acer platanoides L. et Fraxinus excelsior L.) le long d'un gradient de lumière. Le renouvellement des feuilles et des structures nécessaires à leur maintien (l'ensemble correspondant à la tige feuillée) représente chaque année un coût pour les plants. La contribution de la composition biochimique (coût de construction des tissus, CC) et des caractéristiques morphologiques (répartition de la biomasse, masse des feuilles par unité de surface, LMA) aux changements du coût associé à l'étalement des feuilles (coût de construction de la tige feuillée, par unité de surface foliaire, CCA) a été étudiée chez de jeunes plants de Acer platanoides L. et Fraxinus excelsior L. croissant dans un gradient naturel de lumière sous un couvert forestier. Une diminution de LMA avec l'ombrage et des modifications de répartition de biomasse au profit des feuilles et des pétioles et au détriment de la tige expliquent la forte diminution de la masse de la tige feuillée de l'année par unité de surface foliaire (SMA), et l'essentiel de la plasticité observée pour CCA de la tige feuillée chez les deux espèces. En plus, une diminution du coût de construction des feuilles chez A. platanoides contribue également à la diminution de CCA de la tige feuillée avec l'ombrage chez cette espèce. Le coût de construction des feuilles est positivement corrélé à LMA chez F. excelsior, positivement corrélé à LMA et à l'absorbance de l'épiderme dans l'UV (AUV) chez A. platanoides. CC des feuilles est négativement corrélé au contenu en cendre chez les deux espèces. La forte corrélation négative entre AUV et le contenu en azote pourrait tamponner les variations de CC des feuilles chez F. excelsior. The yearly renewal of leaves and their holding organs (the leafy shoot) represent an energetic cost for saplings. The contribution of both biochemical (tissue construction cost, CC) and morphological traits (biomass partitioning and leaf mass per unit area, LMA) to the cost associated with leaf area renewal (construction cost of the leafy shoot per unit leaf area, shoot CCA) was studied in saplings of Acer platanoides L. and Fraxinus excelsior L. growing in a natural light gradient below forest canopy. Decrease in LMA with shade and change in biomass partitioning from stems towards leaves and petioles accounted for the strong decrease in mass per unit area of the leafy shoot (SMA) with shade and for most of the plasticity of shoot CCA in both species. In addition, a decrease in leaf CC in A. platanoides also contributed to the overall decrease of shoot CCA with shade in this species. Leaf CC was positively correlated with LMA in F. excelsior, positively correlated with both LMA and epidermal absorbance of UV (AUV) in A. platanoides. Leaf CC was negatively correlated with ash content in both species. The strong negative correlation between AUV and nitrogen content might have damped variations in leaf CC in F. excelsior.

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    Annals of Forest Science
    Article . 2005 . Peer-reviewed
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    Other literature type . 2005
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    Article . 2005
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      Annals of Forest Science
      Article . 2005 . Peer-reviewed
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      Other literature type . 2005
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      Other literature type . 2005
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    Authors: Krishnan, Parvathy;

    Pathogenic fungi impose a great threat to the global food production. They are globally distributed and display a huge amount of phenotypic diversity. They demonstrate high adaptability to diverse environments and to fluctuating conditions within their hosts. However, not much is known about the mechanisms underlying these processes of adaptation. Deciphering the genetic basis of phenotypic diversity may help us to get a deeper insight into the mechanisms that regulate complex adaptive traits. Furthermore, these findings may help in improving strategies for an effective and sustainable management of pathogens. In my PhD study, I aimed to understand the genetic basis of adaptation to variable environments using Zymoseptoria tritici. Z. tritici causes septoria leaf blotch of wheat and is considered to be the most devastating fungal wheat pathogen in Europe. In the first chapter of my thesis, I studied the role of melanin in adaptation of Z. tritici. I, demonstrated that melanin is essential for protection against harmful chemical fungicides such as bixafen. Remarkably, I observed high phenotypic variability in melanin accumulation levels in different Zymoseptoria tritici strains, most probably reflecting its role in adaptation to variable environments. Using genetic mapping, I was able to demonstrate that variability in melanization levels between two Swiss strains of Z. tritici was mediated by differential expression of the transcription factor Zmr1 (Zymoseptoria melanin regulation 1). I identified nucleotide mutations in the promoter region and an insertion of transposable elements (TEs) upstream of the promoter region as two mechanisms responsible for this observed differential expression of Zmr1. My findings clearly demonstrated the significance of gene expression regulation, mediated by the insertion of TEs and SNPs, in optimizing the growth and adaptation of the fungus under variable environments. Furthermore, these adaptive changes are responsible for the phenotypic diversity that we observe in Z. tritici strains from all over the world. In the second part of my thesis, I analyzed the expression of several secreted peptidases of Z. tritici at distinct stages during the infection process of wheat plants. Using computational genetic methods, I also analyzed nucleotide data sets of the peptidase genes for evolutionary signatures of genetic adaptation. By combining both approaches, I aimed at obtaining a more detailed picture of the relevance and the role of each enzyme during the infection process. I was able to show that the peptidases belonging to MEROPS families A1 and G1 were significantly up regulated during the asymptomatic phase of infection and displayed signatures of accelerated evolution, suggesting their key role in suppression of plant defenses and host specialization. In the third part of my thesis, I evaluated the role of a cellulase-encoding gene (JGI Prot. ID: 76589) using molecular biology techniques. This cellulase was only expressed during the final necrotrophic phase of Z. tritici infection and the nucleotide sequences of the gene showed signatures of diversifying selection. This pattern is consistent with the hypothesis of evasion from host recognition during the first phases of infection and subsequent induction of host-cell death by the secretion of an array of different cellulase isoforms by the fungus. To test this hypothesis, I constitutively expressed the cellulase-encoding gene in Z. tritici during all infection stages by inserting a constitutive promoter (originally from the Glyceraldehyde-3-phosphate dehydrogenase gene of Aspergillus nidulans) upstream of the start codon of the cellulase gene. I was able to show that the progress of infection in this mutant was delayed compared to the non-modified Z. tritici isolates. This suggests that the cellulase acts as an elicitor molecule that is detected by the plant and triggers the defense machinery that will hinder the growth of the pathogen. In summary, my PhD work demonstrated the significance of fine-tuning of gene expression regulation of various genes in plant pathogenic fungi to facilitate adaptation to different environmental conditions and host colonization. Remarkably, I was able to show that gene expression fine-tuning resulted in large amounts of phenotypic diversity in adaptive traits.

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    Research Collection
    Doctoral thesis . 2018
    ETH Zürich Research Collection
    Doctoral thesis . 2018
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      Research Collection
      Doctoral thesis . 2018
      ETH Zürich Research Collection
      Doctoral thesis . 2018
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    Authors: Sonderegger, Walter; Hering, Stefan; Mannes, David; Vontobel, Peter; +2 Authors

    European Journal of Wood and Wood Products, 68 (3) ISSN:1436-736X ISSN:0018-3768

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    European Journal of Wood and Wood Products
    Article . 2010 . Peer-reviewed
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      European Journal of Wood and Wood Products
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    Authors: Jaillard, Benoît; Barry-Etienne, D.; Colinas, C.; de Miguel, A. M.; +10 Authors

    Aim of study: The program "Typology of truffle stations in the Pyrenean Regions" aimed to define the ecological conditions and culture practices that favor Tuber melanosporum growth and fruiting in this area.Area of study: Navarra, Catalonia, Midi-Pyrénées and Languedoc-Roussillon.Material and methods: The program was based on the survey of 212 wild and cultivated truffle beds of evergreen oaks (Quercus ilex). The data collected in the field consisted of photographs, samples of soil, roots and mycorrhizae, and information on cultural practices followed by truffle growers.Main results: (i) truffle soils are alkaline, from neutral, dolomitic, to moderately or very calcareous soils; (ii) truffle soils are light, well-structured and stable to water immersion; (iii) mycelium that colonizes roots survives in suboptimal conditions, but it does not necessarily bear ascocarps. Finally our results suggest that T. melanosporum is a relatively ubiquitous fungus able to grow, or at least to persist, in a wide range of physical and chemical soil conditions. We propose a probabilistic model of the environment favorable for fruiting, built around a two-dimensional graph with an axis for the chemical conditions, like soil alkalinity, and another axis for the physical conditions, like soil structure. Research highlights: Soil alkalinity and structure allow to built a convenient representation of the ecological capacity of a place to be good T. melanosporum habitat, and thus of the probability for truffle growers to harvest truffles according to the environmental properties of their truffle orchards.Keywords: dolomite; limestone; mycorrhizae; Quercus ilex; field survey; Tuber melanosporum.

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    ProdInra
    Article . 2014
    License: CC BY SA
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    Horizon / Pleins textes
    Other literature type . 2014
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    Forest Systems
    Article
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    DOAJ
    Article . 2014
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    Forest Systems
    Article . 2014 . Peer-reviewed
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    Repositori Obert UdL
    Article . 2014
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      ProdInra
      Article . 2014
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      Horizon / Pleins textes
      Other literature type . 2014
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      Forest Systems
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      DOAJ
      Article . 2014
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      Forest Systems
      Article . 2014 . Peer-reviewed
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      Repositori Obert UdL
      Article . 2014
      License: CC BY
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Matthias Bürgi; Enrico Celio; Vasco Diogo; Anna M. Hersperger; +6 Authors

    Over the past 25 years, the study of driving forces of landscape change has developed into a central theme in land change science by contributing to theory development, promoting the analysis of causation of change and gaining insights into how landscape development could be steered into a societally more desirable direction. Based on this progress, we designate important research avenues, reviewing critical challenges forming the base for advancing the study of driving forces of landscape change and addressing the question on how the study of driving forces can contribute to system transformative research. For each of the research avenues, we describe the current dominant approach and provide some specific ways of advancing both the conceptualization and the research methods. Together, advancing on these research avenues will promote a more social-ecological systems perspective to the study of driving forces of landscape change. Journal of Land Use Science, 17 (1) ISSN:1747-4248 ISSN:1747-423X

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    Journal of Land Use Science
    Article . 2022 . Peer-reviewed
    License: CC BY NC ND
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    https://doi.org/10.48350/17838...
    Article . 2022
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    Research Collection
    Article . 2022
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      Journal of Land Use Science
      Article . 2022 . Peer-reviewed
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      https://doi.org/10.48350/17838...
      Article . 2022
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      Article . 2022
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    Authors: Marie-Laure Desprez-Loustau; Gilles Saint-Jean; Benoit Barrès; Cécile Françoise Dantec; +1 Authors

    Context[br/] Parasites can induce strong effects on their host’s growth, not only as a result of host resource exploitation (growth loss) but also with a potential adaptive value for host (tolerance response) and themselves (increased transmission).[br/] [br/] Aims[br/] We assessed these three types of phenotypic changes in oak seedlings infected by powdery mildew.[br/] [br/] Methods[br/] A manipulative field experiment with three levels of parasite inoculum was designed in order to tease apart infection from genetic effects on oak growth. Seedlings were monitored during 3 years for height growth, phenology and infection.[br/] [br/] Results[br/] Powdery mildew infection induced both significant growth loss and qualitative changes in plant architecture. The most striking and unexpected change was increased growth polycyclism in infected seedlings. This benefitted both the host as a form of compensation for infection-caused height loss, and the pathogen, by increasing sporulation.[br/] [br/] Conclusion[br/] The study highlights the effect of parasites in the expression of plant phenotypic traits, such as phenology and ultimately tree architecture. Both host tolerance and parasitic manipulation may be involved in the observed changes in growth patterns. These results suggest a complex interplay between development and defence in trees and emphasize the need to better assess tolerance mechanisms when considering the defence strategies of trees against pathogens.

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    Annals of Forest Science
    Article . 2014 . Peer-reviewed
    License: Springer TDM
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    Article . 2014
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    Authors: Walker, Emily; Monestiez, Pascal; Gomez, Cécile; Lagacherie, Philippe;

    The limited availability of soil information has been recognized as a main limiting factor in digital soil mapping (DSM) studies. It is therefore important to optimize the joint use of the three sources of soil data that can be used as inputs of DSM models, namely spatial sets of measured sites, soil maps and soil sensing products.In this paper, we propose to combine these three inputs, through a cokriging with a categorical external drift (CKCED). This new interpolation technique was applied for mapping seven soil properties over a 24.6 km2 area located in the vineyard plain of Languedoc (Southern France), using an hyperspectral imagery product as example of a soil sensing data. Cross-validation results of CKCED were compared with those of five spatial and non-spatial techniques using one of these inputs or a combination of two of them.The results obtained in the La Peyne Catchment showed i) the utility of soil map and hyperspectral imagery products as auxiliary data for improving soil property predictions ii) the greater added-value of the latter against the former in most situations and iii) the feasibility and the interest of CKCED in a limited number of soil properties and data configurations. Testing CKCED in case study with soil maps of better quality and soil sensing techniques covering more area and depths should be necessary to better evaluate the benefits of this new technique. International audience

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    Geoderma
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    ProdInra
    Article . 2017
    License: CC BY SA
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    Horizon / Pleins textes
    Other literature type . 2017
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    Geoderma
    Article . 2017 . Peer-reviewed
    License: Elsevier TDM
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      Geoderma
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      ProdInra
      Article . 2017
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      Horizon / Pleins textes
      Other literature type . 2017
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      Geoderma
      Article . 2017 . Peer-reviewed
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    Authors: Camille Abadie; Fabienne Maignan; Marine Remaud; Kukka-Maaria Kohonen; +8 Authors

    Gross primary production (GPP) by boreal forests is highly sensitive to environmental changes. However, GPP simulated by land surface models (LSMs) remains highly uncertain due to the lack of direct photosynthesis observations at large scales. Carbonyl sulfide (COS) has emerged as a promising proxy to improve the representation of GPP in LSMs. Because COS is absorbed by vegetation following the same diffusion pathway as CO2 during photosynthesis and not emitted back to the atmosphere, incorporating a mechanistic representation of vegetation COS uptake in LSMs allows using COS observations to refine GPP representation. Here, we perform ecosystem COS flux and GPP data assimilations to constrain the COS- and GPP-related parameters in the ORCHIDEE LSM for boreal evergreen needleleaf forests (BorENF). Assimilating ecosystem COS fluxes at Hyytiälä forest increases the simulated net ecosystem COS uptake by 14%. This increase largely results from changes in the internal conductance to COS, highlighting the need to improve the representation of COS internal diffusion and consumption. Moreover, joint assimilation of ecosystem COS flux and GPP at Hyytiälä improves the simulated latent heat flux, contrary to the GPP-only data assimilation, which fails to do so. Finally, we scaled this assimilation framework up to the boreal region and find that the joint assimilation of COS at Hyytiälä and GPP fluxes at 10 BorENF sites increases the modeled vegetation COS uptake up to 18%, but not GPP. Therefore, this study encourages the use of COS flux observations to inform GPP and latent heat flux representations in LSMs. Journal of Geophysical Research: Biogeosciences, 128 (7) ISSN:2169-8961 ISSN:0148-0227 ISSN:2169-8953

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    Research Collection
    Article . 2023
    License: CC BY
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    Research@WUR
    Article . 2023
    License: CC BY
    Data sources: Research@WUR
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    Journal of Geophysical Research Biogeosciences
    Article . 2023 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
    https://doi.org/10.5194/egusph...
    Other literature type . 2023
    Data sources: Crossref
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    Authors: Kellerhals, Markus;
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    Research Collection
    Doctoral thesis . 1985
    ETH Zürich Research Collection
    Doctoral thesis . 1985
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      Research Collection
      Doctoral thesis . 1985
      ETH Zürich Research Collection
      Doctoral thesis . 1985
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    Authors: Rumbou, Artemis;
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    Doctoral thesis . 2004
    ETH Zürich Research Collection
    Doctoral thesis . 2004
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      Doctoral thesis . 2004
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      Doctoral thesis . 2004
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    Authors: Barthod, Sandrine; Epron, Daniel;

    Variations du coût de construction associées au renouvellement de la surface foliaire chez de jeunes plants de deux espèces sympatriques de forêt tempérée (Acer platanoides L. et Fraxinus excelsior L.) le long d'un gradient de lumière. Le renouvellement des feuilles et des structures nécessaires à leur maintien (l'ensemble correspondant à la tige feuillée) représente chaque année un coût pour les plants. La contribution de la composition biochimique (coût de construction des tissus, CC) et des caractéristiques morphologiques (répartition de la biomasse, masse des feuilles par unité de surface, LMA) aux changements du coût associé à l'étalement des feuilles (coût de construction de la tige feuillée, par unité de surface foliaire, CCA) a été étudiée chez de jeunes plants de Acer platanoides L. et Fraxinus excelsior L. croissant dans un gradient naturel de lumière sous un couvert forestier. Une diminution de LMA avec l'ombrage et des modifications de répartition de biomasse au profit des feuilles et des pétioles et au détriment de la tige expliquent la forte diminution de la masse de la tige feuillée de l'année par unité de surface foliaire (SMA), et l'essentiel de la plasticité observée pour CCA de la tige feuillée chez les deux espèces. En plus, une diminution du coût de construction des feuilles chez A. platanoides contribue également à la diminution de CCA de la tige feuillée avec l'ombrage chez cette espèce. Le coût de construction des feuilles est positivement corrélé à LMA chez F. excelsior, positivement corrélé à LMA et à l'absorbance de l'épiderme dans l'UV (AUV) chez A. platanoides. CC des feuilles est négativement corrélé au contenu en cendre chez les deux espèces. La forte corrélation négative entre AUV et le contenu en azote pourrait tamponner les variations de CC des feuilles chez F. excelsior. The yearly renewal of leaves and their holding organs (the leafy shoot) represent an energetic cost for saplings. The contribution of both biochemical (tissue construction cost, CC) and morphological traits (biomass partitioning and leaf mass per unit area, LMA) to the cost associated with leaf area renewal (construction cost of the leafy shoot per unit leaf area, shoot CCA) was studied in saplings of Acer platanoides L. and Fraxinus excelsior L. growing in a natural light gradient below forest canopy. Decrease in LMA with shade and change in biomass partitioning from stems towards leaves and petioles accounted for the strong decrease in mass per unit area of the leafy shoot (SMA) with shade and for most of the plasticity of shoot CCA in both species. In addition, a decrease in leaf CC in A. platanoides also contributed to the overall decrease of shoot CCA with shade in this species. Leaf CC was positively correlated with LMA in F. excelsior, positively correlated with both LMA and epidermal absorbance of UV (AUV) in A. platanoides. Leaf CC was negatively correlated with ash content in both species. The strong negative correlation between AUV and nitrogen content might have damped variations in leaf CC in F. excelsior.

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    Annals of Forest Science
    Article . 2005 . Peer-reviewed
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    Other literature type . 2005
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    Article . 2005
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      Annals of Forest Science
      Article . 2005 . Peer-reviewed
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      Other literature type . 2005
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      Other literature type . 2005
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      Article . 2005
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    Authors: Krishnan, Parvathy;

    Pathogenic fungi impose a great threat to the global food production. They are globally distributed and display a huge amount of phenotypic diversity. They demonstrate high adaptability to diverse environments and to fluctuating conditions within their hosts. However, not much is known about the mechanisms underlying these processes of adaptation. Deciphering the genetic basis of phenotypic diversity may help us to get a deeper insight into the mechanisms that regulate complex adaptive traits. Furthermore, these findings may help in improving strategies for an effective and sustainable management of pathogens. In my PhD study, I aimed to understand the genetic basis of adaptation to variable environments using Zymoseptoria tritici. Z. tritici causes septoria leaf blotch of wheat and is considered to be the most devastating fungal wheat pathogen in Europe. In the first chapter of my thesis, I studied the role of melanin in adaptation of Z. tritici. I, demonstrated that melanin is essential for protection against harmful chemical fungicides such as bixafen. Remarkably, I observed high phenotypic variability in melanin accumulation levels in different Zymoseptoria tritici strains, most probably reflecting its role in adaptation to variable environments. Using genetic mapping, I was able to demonstrate that variability in melanization levels between two Swiss strains of Z. tritici was mediated by differential expression of the transcription factor Zmr1 (Zymoseptoria melanin regulation 1). I identified nucleotide mutations in the promoter region and an insertion of transposable elements (TEs) upstream of the promoter region as two mechanisms responsible for this observed differential expression of Zmr1. My findings clearly demonstrated the significance of gene expression regulation, mediated by the insertion of TEs and SNPs, in optimizing the growth and adaptation of the fungus under variable environments. Furthermore, these adaptive changes are responsible for the phenotypic diversity that we observe in Z. tritici strains from all over the world. In the second part of my thesis, I analyzed the expression of several secreted peptidases of Z. tritici at distinct stages during the infection process of wheat plants. Using computational genetic methods, I also analyzed nucleotide data sets of the peptidase genes for evolutionary signatures of genetic adaptation. By combining both approaches, I aimed at obtaining a more detailed picture of the relevance and the role of each enzyme during the infection process. I was able to show that the peptidases belonging to MEROPS families A1 and G1 were significantly up regulated during the asymptomatic phase of infection and displayed signatures of accelerated evolution, suggesting their key role in suppression of plant defenses and host specialization. In the third part of my thesis, I evaluated the role of a cellulase-encoding gene (JGI Prot. ID: 76589) using molecular biology techniques. This cellulase was only expressed during the final necrotrophic phase of Z. tritici infection and the nucleotide sequences of the gene showed signatures of diversifying selection. This pattern is consistent with the hypothesis of evasion from host recognition during the first phases of infection and subsequent induction of host-cell death by the secretion of an array of different cellulase isoforms by the fungus. To test this hypothesis, I constitutively expressed the cellulase-encoding gene in Z. tritici during all infection stages by inserting a constitutive promoter (originally from the Glyceraldehyde-3-phosphate dehydrogenase gene of Aspergillus nidulans) upstream of the start codon of the cellulase gene. I was able to show that the progress of infection in this mutant was delayed compared to the non-modified Z. tritici isolates. This suggests that the cellulase acts as an elicitor molecule that is detected by the plant and triggers the defense machinery that will hinder the growth of the pathogen. In summary, my PhD work demonstrated the significance of fine-tuning of gene expression regulation of various genes in plant pathogenic fungi to facilitate adaptation to different environmental conditions and host colonization. Remarkably, I was able to show that gene expression fine-tuning resulted in large amounts of phenotypic diversity in adaptive traits.

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    Doctoral thesis . 2018
    ETH Zürich Research Collection
    Doctoral thesis . 2018
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      Doctoral thesis . 2018
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      Doctoral thesis . 2018
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    Authors: Sonderegger, Walter; Hering, Stefan; Mannes, David; Vontobel, Peter; +2 Authors

    European Journal of Wood and Wood Products, 68 (3) ISSN:1436-736X ISSN:0018-3768

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    European Journal of Wood and Wood Products
    Article . 2010 . Peer-reviewed
    License: Springer TDM
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    Authors: Jaillard, Benoît; Barry-Etienne, D.; Colinas, C.; de Miguel, A. M.; +10 Authors

    Aim of study: The program "Typology of truffle stations in the Pyrenean Regions" aimed to define the ecological conditions and culture practices that favor Tuber melanosporum growth and fruiting in this area.Area of study: Navarra, Catalonia, Midi-Pyrénées and Languedoc-Roussillon.Material and methods: The program was based on the survey of 212 wild and cultivated truffle beds of evergreen oaks (Quercus ilex). The data collected in the field consisted of photographs, samples of soil, roots and mycorrhizae, and information on cultural practices followed by truffle growers.Main results: (i) truffle soils are alkaline, from neutral, dolomitic, to moderately or very calcareous soils; (ii) truffle soils are light, well-structured and stable to water immersion; (iii) mycelium that colonizes roots survives in suboptimal conditions, but it does not necessarily bear ascocarps. Finally our results suggest that T. melanosporum is a relatively ubiquitous fungus able to grow, or at least to persist, in a wide range of physical and chemical soil conditions. We propose a probabilistic model of the environment favorable for fruiting, built around a two-dimensional graph with an axis for the chemical conditions, like soil alkalinity, and another axis for the physical conditions, like soil structure. Research highlights: Soil alkalinity and structure allow to built a convenient representation of the ecological capacity of a place to be good T. melanosporum habitat, and thus of the probability for truffle growers to harvest truffles according to the environmental properties of their truffle orchards.Keywords: dolomite; limestone; mycorrhizae; Quercus ilex; field survey; Tuber melanosporum.

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    ProdInra
    Article . 2014
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    Other literature type . 2014
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    Forest Systems
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    Forest Systems
    Article . 2014 . Peer-reviewed
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    Repositori Obert UdL
    Article . 2014
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      Other literature type . 2014
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      Forest Systems
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