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13 Research products

  • Rural Digital Europe
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  • Swiss National Science Foundation
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Tuia, Devis; Kellenberger, Benjamin; Perez-suey, Adrian; Camps-valls, Gustau;

    We present a deep learning model with temporal memory to detect clouds in image time series acquired by the Seviri imager mounted on the Meteosat Second Generation (MSG) satellite. The model provides pixel-level cloud maps with related confidence and propagates information in time via a recurrent neural network structure. With a single model, we are able to outline clouds along all year and during day and night with high accuracy.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCIS; Research@WURarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Other literature type . Conference object . 2018
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Other literature type . Conference object . 2018 . Peer-reviewed
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    http://arxiv.org/pdf/2012.1039...
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    https://doi.org/10.48550/arxiv...
    Article . 2020
    License: CC BY NC ND
    Data sources: Datacite
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCIS; Research@WURarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      Other literature type . Conference object . 2018
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      Other literature type . Conference object . 2018 . Peer-reviewed
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      http://arxiv.org/pdf/2012.1039...
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      https://doi.org/10.48550/arxiv...
      Article . 2020
      License: CC BY NC ND
      Data sources: Datacite
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Tichý, Lubomír; Axmanová, Irena; Dengler, Jürgen; Guarino, Riccardo; +58 Authors

    Aims: Ellenberg-type indicator values are expert-based rankings of plant species according to their ecological optima on main environmental gradients. Here we extend the indicator-value system proposed by Heinz Ellenberg and co-authors for Central Europe by incorporating other systems of Ellenberg-type indicator values (i.e., those using scales compatible with Ellenberg values) developed for other European regions. Our aim is to create a harmonized data set of Ellenberg-type indicator values applicable at the European scale.Methods: We collected European data sets of indicator values for vascular plants and selected 13 data sets that used the nine-, ten- or twelve-degree scales defined by Ellenberg for light, temperature, moisture, reaction, nutrients and salinity. We compared these values with the original Ellenberg values and used those that showed consistent trends in regression slope and coefficient of determination. We calculated the average value for each combination of species and indicator values from these data sets. Based on species' co-occurrences in European vegetation plots, we also calculated new values for species that were not assigned an indicator value.Results: We provide a new data set of Ellenberg-type indicator values for 8908 European vascular plant species (8168 for light, 7400 for temperature, 8030 for moisture, 7282 for reaction, 7193 for nutrients, and 7507 for salinity), of which 398 species have been newly assigned to at least one indicator value.Conclusions: The newly introduced indicator values are compatible with the original Ellenberg values. They can be used for large-scale studies of the European flora and vegetation or for gap-filling in regional data sets. The European indicator values and the original and taxonomically harmonized regional data sets of Ellenberg-type indicator values are available in the Supporting Information and the Zenodo repository. This research was funded through the 2019–2020 BiodivERsA joint call for research proposals under the BiodivClim ERA-Net COFUND program and with the funding organizations Technology Agency of the Czech Republic (SS70010002), the Swiss National Science Foundation SNF (project: FeedBaCks, 193907), and the German Research Foundation (DFG BR 1698/21–1, DFG HI 1538/16–1). Eduardo Fernández-Pascual was supported by the Jardín Botánico Atlántico (SV-20-GIJON-JBA), Andraž Čarni, Urban Šilc and Filip Küzmič were funded by Slovenian Research Agency (ARRS P1–0236), Idoia Biurrun and Juan Antonio Campos were funded by the Basque Government (IT1487–22), and Solvita Rūsiņa was funded by the LIFE Integrated Project LIFE19 IPE/LV/000010.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Recolector de Cienci...arrow_drop_down
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    Other literature type . Article . 2022
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    Article . 2023
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    Other literature type . 2023
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Article . 2022
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Journal of Vegetation Science
    Article . 2023 . 2022 . Peer-reviewed
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Recolector de Cienci...arrow_drop_down
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      Other literature type . Article . 2022
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      Lirias
      Article . 2023
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      Other literature type . 2023
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      ZENODO
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      Journal of Vegetation Science
      Article . 2023 . 2022 . Peer-reviewed
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: J. Henneberger; J. P. Fugal; O. Stetzer; U. Lohmann;

    Measurements of the microphysical properties of mixed-phase clouds with high spatial resolution are important to understand the processes inside these clouds. This work describes the design and characterization of the newly developed ground-based field instrument HOLIMO II (HOLographic Imager for Microscopic Objects II). HOLIMO II uses digital in-line holography to in situ image cloud particles in a well-defined sample volume. By an automated algorithm, two-dimensional images of single cloud particles between 6 and 250 μm in diameter are obtained and the size spectrum, the concentration and water content of clouds are calculated. By testing the sizing algorithm with monosized beads a systematic overestimation near the resolution limit was found, which has been used to correct the measurements. Field measurements from the high altitude research station Jungfraujoch, Switzerland, are presented. The measured number size distributions are in good agreement with parallel measurements by a fog monitor (FM-100, DMT, Boulder USA). The field data shows that HOLIMO II is capable of measuring the number size distribution with a high spatial resolution and determines ice crystal shape, thus providing a method of quantifying variations in microphysical properties. A case study over a period of 8 h has been analyzed, exploring the transition from a liquid to a mixed-phase cloud, which is the longest observation of a cloud with a holographic device. During the measurement period, the cloud does not completely glaciate, contradicting earlier assumptions of the dominance of the Wegener–Bergeron–Findeisen (WBF) process. Atmospheric Measurement Techniques, 6 (11) ISSN:1867-8548 ISSN:1867-1381

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    Research Collection
    Article . 2013
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    https://doi.org/10.5194/amtd-6...
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    http://www.atmos-meas-tech.net...
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    Atmospheric Measurement Techniques
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    Atmospheric Measurement Techniques
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    Authors: Laura Bosco; Valentin Moser; Mirkka M. Jones; Øystein Opedal; +6 Authors

    Fragmentation of habitat, for example by intensive agricultural practices, can be detrimental to local biodiversity. However, it often remains unclear whether such biodiversity declines are caused by loss of habitat area or increased fragmentation, and how habitat quality factors into it. In our study system, vegetated vineyards are typically small, and isolated from one another, potentially limiting the distribution and dispersal of organisms. In a full-factorial experiment of a priori selected vegetated vineyard patches of differing size and fragmentation, we aimed to disentangle the effects of habitat area (area of vegetated vineyards), habitat fragmentation (number of vegetated vineyards per 100 ha) and field-scale ground vegetation density on ground beetle, leafhopper and wild bee communities using a combined framework of multiscale and multispecies modelling (Hierarchical Model of Species Communities). We demonstrate variable effects of habitat area, fragmentation and local ground vegetation density on the three insect groups: Increased habitat area at fine scales favours higher species richness of leafhoppers, while local vegetation density boosts species richness of both leafhoppers and ground beetles, whereas no community-level responses were detected for wild bees. We conclude that increased ground vegetation density at both field and landscape scales (i.e. higher habitat area) favours more diverse and abundant insect communities, while fragmentation effects are highly variable and species specific. In addition, our results highlight that mainly ground beetles and leafhoppers will benefit from simple ground greening measures in vineyards, while for wild bees environmental factors other than the ones tested here may drive community structure. We recommend increasing the number and area of vegetated vineyards (even at small spatial scales) requiring more nature-friendly farming practices especially regarding a reduction or renunciation from herbicide applications, while the within-field vegetation density should optimally be intermediate or high to favour a diverse insect community. Ecological Solutions and Evidence, 4 (1) ISSN:2688-8319

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    Jyväskylä University Digital Archive
    Article . 2023 . Peer-reviewed
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    Ecological Solutions and Evidence
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    https://doi.org/10.25673/10169...
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    Authors: Zuzana Hofmanová; Susanne Kreutzer; Garrett Hellenthal; Christian Sell; +35 Authors

    We thank Songul Alpaslan for help with sampling in Barcin and Eleni Stravopodi for help with sampling in Theopetra. Z.H. and R.M. are supported by a Marie Curie Initial Training Network (BEAN/Bridging the European and Anatolian Neolithic, GA 289966) awarded to M.C., S.J.S., D.G.B., M.G.T., and J. Burger. C.P., J. Burger and S.K. received funding from DFG (BU 1403/6-1). C.P. and J. Burger received funding from the Alexander von Humboldt Foundation. C.S. and M.S. were supported by the European Union (EU) SYNTHESYS/Synthesis of Systematic Resources GA 226506-CP-CSA-INFRA, DFG: (BO 4119/1) and Volkswagenstiftung (FKZ: 87161). L.M.C. is funded by the Irish Research Council (GOIPG/2013/1219). A.S. was supported by the EU CodeX Project 295729. K. Kotsakis, S.T., D.U.-K., P.H., and C.P. were cofinanced by the EU Social Fund and Greek national funds research funding program THALES. C.P., M.U., K. Kotsakis, S.T., and D.U.-K. were cofinanced by the EU Social Fund and the Greek national funds research funding program ARISTEIA II. M.C. was supported by Swiss NSF Grant 31003A_156853. A. K. and D.W. were supported by Swiss NSF Grant 31003A_149920. S.L. is supported by the BBSRC (Grant BB/L009382/1). L.v.D. is supported by CoMPLEX via EPSRC (Grant EP/F500351/1). G.H. is supported by a Sir Henry Dale Fellowship jointly funded by the Wellcome Trust and the Royal Society (Grant 098386/Z/12/Z) and by the National Institute for Health Research University College London Hospitals Biomedical Research Centre. M.G.T. and Y.D. are supported by a Wellcome Trust Senior Research Fellowship Grant 100719/Z/12/Z (to M.G.T.). J. Burger is grateful for support by the University of Mainz and the HPC cluster MOGON (funded by DFG; INST 247/602-1 FUGG). F.G. was supported by Grant 380-62-005 of the Netherlands Organization for Scientific Research. Marie Curie Initial Training Network (BEAN/Bridging the European and Anatolian Neolithic) [GA 289966]; DFGGerman Research Foundation (DFG) [BU 1403/6-1, BO 4119/1]; Alexander von Humboldt FoundationAlexander von Humboldt Foundation; European Union (EU) SYNTHESYS/Synthesis of Systematic Resources [GA 226506-CP-CSA-INFRA]; VolkswagenstiftungVolkswagen [FKZ: 87161]; Irish Research CouncilIrish Research Council for Science, Engineering and Technology [GOIPG/2013/1219]; EU CodeX Project [295729]; EU Social Fund; Greek national funds research funding program THALES; Greek national funds research funding program ARISTEIA II; Swiss NSFSwiss National Science Foundation (SNSF) [31003A_156853, 31003A_149920]; BBSRCBiotechnology and Biological Sciences Research Council (BBSRC) [BB/L009382/1]; CoMPLEX via EPSRC [EP/F500351/1]; Sir Henry Dale Fellowship - Wellcome Trust [098386/Z/12/Z]; Sir Henry Dale Fellowship - Royal Society [098386/Z/12/Z]; National Institute for Health Research University College London Hospitals Biomedical Research Centre; Wellcome TrustWellcome Trust [100719/Z/12/Z]; University of Mainz; HPC cluster MOGON - DFG [INST 247/602-1 FUGG]; Netherlands Organization for Scientific ResearchNetherlands Organization for Scientific Research (NWO) [380-62-005]; Biotechnology and Biological Sciences Research CouncilBiotechnology and Biological Sciences Research Council (BBSRC) [BB/L009382/1]; Engineering and Physical Sciences Research CouncilEngineering ; Physical Sciences Research Council (EPSRC) [1357822] Farming and sedentism first appeared in southwestern Asia during the early Holocene and later spread to neighboring regions, including Europe, along multiple dispersal routes. Conspicuous uncertainties remain about the relative roles of migration, cultural diffusion, and admixture with local foragers in the early Neolithization of Europe. Here we present paleogenomic data for five Neolithic individuals from northern Greece and northwestern Turkey spanning the time and region of the earliest spread of farming into Europe. We use a novel approach to recalibrate raw reads and call genotypes from ancient DNA and observe striking genetic similarity both among Aegean early farmers and with those from across Europe. Our study demonstrates a direct genetic link between Mediterranean and Central European early farmers and those of Greece and Anatolia, extending the European Neolithic migratory chain all the way back to southwestern Asia. WOS: 000378272400038 PubMed ID: 27274049

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    bioRxiv
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    Europe PubMed Central
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      bioRxiv
      Preprint . 2015
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      http://www.pnas.org/content/11...
      Article . 2016 . Peer-reviewed
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      Europe PubMed Central
      Other literature type . 2016
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    Authors: Rasha Abbasi; Y. Abdou; Markus Ackermann; Jenni Adams; +202 Authors

    IceTop, the surface component of the IceCube Neutrino Observatory at the South Pole, is an air shower array with an area of 1 km2. The detector allows a detailed exploration of the mass composition of primary cosmic rays in the energy range from about 100 TeV to 1 EeV by exploiting the correlation between the shower energy measured in IceTop and the energy deposited by muons in the deep ice. In this paper we report on the technical design, construction and installation, the trigger and data acquisition systems as well as the software framework for calibration, reconstruction and simulation. Finally the first experience from commissioning and operating the detector and the performance as an air shower detector will be discussed. Comment: 50 pages, 38 figures; submitted to NIM A

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    https://doi.org/10.48550/arxiv...
    Article . 2012
    License: arXiv Non-Exclusive Distribution
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      https://doi.org/10.48550/arxiv...
      Article . 2012
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    Authors: Tuia, Devis; Marcos, Diego; Camps-Valls, Gustau;

    Remote sensing image classification exploiting multiple sensors is a very challenging problem: data from different modalities are affected by spectral distortions and mis-alignments of all kinds, and this hampers re-using models built for one image to be used successfully in other scenes. In order to adapt and transfer models across image acquisitions, one must be able to cope with datasets that are not co-registered, acquired under different illumination and atmospheric conditions, by different sensors, and with scarce ground references. Traditionally, methods based on histogram matching have been used. However, they fail when densities have very different shapes or when there is no corresponding band to be matched between the images. An alternative builds upon \emph{manifold alignment}. Manifold alignment performs a multidimensional relative normalization of the data prior to product generation that can cope with data of different dimensionality (e.g. different number of bands) and possibly unpaired examples. Aligning data distributions is an appealing strategy, since it allows to provide data spaces that are more similar to each other, regardless of the subsequent use of the transformed data. In this paper, we study a methodology that aligns data from different domains in a nonlinear way through {\em kernelization}. We introduce the Kernel Manifold Alignment (KEMA) method, which provides a flexible and discriminative projection map, exploits only a few labeled samples (or semantic ties) in each domain, and reduces to solving a generalized eigenvalue problem. We successfully test KEMA in multi-temporal and multi-source very high resolution classification tasks, as well as on the task of making a model invariant to shadowing for hyperspectral imaging.

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    http://www.geo.uzh.ch/dam/jcr:...
    Article . 2016 . Peer-reviewed
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    ISPRS Journal of Photogrammetry and Remote Sensing
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    Other literature type . Article . 2016
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    ISPRS Journal of Photogrammetry and Remote Sensing
    Other literature type . Article . 2016 . Peer-reviewed
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    https://doi.org/10.48550/arxiv...
    Article . 2020
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      ISPRS Journal of Photogrammetry and Remote Sensing
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      ISPRS Journal of Photogrammetry and Remote Sensing
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      https://doi.org/10.48550/arxiv...
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    Authors: M. G. Aartsen; Y. Abdou; Markus Ackermann; Jenni Adams; +196 Authors

    The IceCube project has transformed one cubic kilometer of deep natural Antarctic ice into a Cherenkov detector. Muon neutrinos are detected and their direction inferred by mapping the light produced by the secondary muon track inside the volume instrumented with photomultipliers. Reconstructing the muon track from the observed light is challenging due to noise, light scattering in the ice medium, and the possibility of simultaneously having multiple muons inside the detector, resulting from the large flux of cosmic ray muons. This manuscript describes work on two problems: (1) the track reconstruction problem, in which, given a set of observations, the goal is to recover the track of a muon; and (2) the coincident event problem, which is to determine how many muons are active in the detector during a time window. Rather than solving these problems by developing more complex physical models that are applied at later stages of the analysis, our approach is to augment the detectors early reconstruction with data filters and robust statistical techniques. These can be implemented at the level of on-line reconstruction and, therefore, improve all subsequent reconstructions. Using the metric of median angular resolution, a standard metric for track reconstruction, we improve the accuracy in the initial reconstruction direction by 13%. We also present improvements in measuring the number of muons in coincident events: we can accurately determine the number of muons 98% of the time. 14 pages, 4 figures, submitted to Nuclear Instruments and Methods in Physics Research Section A

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    http://arxiv.org/abs/arXiv:130...
    Article . 2014 . Peer-reviewed
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    https://doi.org/10.48550/arxiv...
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Nuclear Instruments ...arrow_drop_down
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